Ghost Database: Ciona intestinalis genomic and cDNA resources (Ciona is called 'Yurei(ghost)-Boya(ascidian)' in Japanese)

 

 

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Landmark or Region: Examples: Chromosome1:1..10000, Chromosome2:1..10000, Chromosome3:1..10000, Chromosome4:1..10000, Chromosome5:1..10000, Chromosome6:1..10000, Chromosome7:1..10000, Chromosome8:1..10000, Chromosome9:1..10000, Chromosome10:1..10000, Chromosome11:1..10000, Chromosome12:1..10000, Chromosome13:1..10000, Chromosome14:1..10000, KhL10:175452..185452, KhS1404.	Annotate Restriction Sites Download Alignments Download Decorated FASTA File Download Sequence File Download Track Data
Data Source Ciona intestinalis KH Ciona intestinalis KH (inbred line A) Ciona intestinalis KH (inbred line B) Ciona savignyi Oikopleura dioica Database Tutorial database	Scroll/Zoom:     Show 500 kbp Show 100 kbp Show 50 kbp Show 40 kbp Show 30 kbp Show 20 kbp Show 15 kbp Show 10 kbp Show 5 kbp Show 4 kbp Show 3 kbp Show 2 kbp Show 1 kbp Show 500 bp Show 200 bp Show 150 bp Show 100 bp     Flip

 Overview

 Overview

 

  JGI ver1 Scaffold  

 Region

 Region

 

  Gap  

  JGI ver1 Scaffold  

 Details

 Details

 

  Genes (KH, ver.2013)  

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 Tracks

 Tracks

 

 ChIPonChip

 ChIPonChip

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ChIPonChip Profile (Bra_1) [?]	ChIPonChip Profile (MACHO_1) [?]	ChIPonChip Profile (Tbx6b_1) [?]
ChIPonChip Profile (Bra_2) [?]	ChIPonChip Profile (MyoD_1) [?]	ChIPonChip Profile (Tbx6b_2) [?]
ChIPonChip Profile (ETR_FoxAa_1) [?]	ChIPonChip Profile (MyoD_2) [?]	ChIPonChip Profile (TCF_1) [?]
ChIPonChip Profile (ETS_1) [?]	ChIPonChip Profile (Neurogenin_1) [?]	ChIPonChip Profile (Twist1_1) [?]
ChIPonChip Profile (FoxAa_1) [?]	ChIPonChip Profile (Neurogenin_2) [?]	ChIPonChip Profile (Twist1_2) [?]
ChIPonChip Profile (FoxAa_2) [?]	ChIPonChip Profile (Otx_1) [?]	ChIPonChip Profile (Twist1_3) [?]
ChIPonChip Profile (FoxD32_1) [?]	ChIPonChip Profile (Otx_2) [?]	ChIPonChip Profile (ZF105_1) [?]
ChIPonChip Profile (FoxD32_2) [?]	ChIPonChip Profile (Snail_1) [?]	ChIPonChip Profile (ZicL_1) [?]
ChIPonChip Profile (FoxD_1) [?]	ChIPonChip Profile (Snail_2) [?]	ChIPonChip Profile (ZicL_2) [?]
ChIPonChip Profile (FoxD_2) [?]	ChIPonChip Profile (SoxC_1) [?]
ChIPonChip Profile (GATAa_1) [?]	ChIPonChip Profile (SoxC_2) [?]

 EST cluster

 EST cluster

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EST CLUSTER [?]	stringently-defined trans-splice acceptor sites (Hastings Lab) [?]	TSSs and SL sites (Nakai Lab) [?]
FLEST (5' -Full-Length EST) CLUSTER [?]	Transcription Start Sites and SL-trans-splicing acceptor sites [?]

 Gene Expression Arrays

 Gene Expression Arrays

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GE_15534 [?]

GE_22499 [?]

 Gene predictions

 Gene predictions

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Gene Models other than KH [?]

Supplemental KH Models [?]

 General

 General

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3-frame translation (forward)	DNA/GC Content	SNPs,Indels
3-frame translation (reverse)	Nucleosome Prediction (Lemaire Lab) [?]
BAC End [?]	Scaffold and Gaps [?]

 Inbred Strain

 Inbred Strain

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Inbred Strain A; Assembled Genome	Inbred Strain A; SNPs,Indels	Inbred Strain B; heterozygous sites [?]
Inbred Strain A; heterozygous sites [?]	Inbred Strain B; Assembled Genome	Inbred Strain B; SNPs,Indels

 KH Gene Models(Current Version)

 KH Gene Models(Current Version)

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Genes (KH, ver.2013) [?]

Genes abandoned in KH, ver.2013 [?]

Operons (KH, ver.2013) [?]

 KH Gene Models(Former Version)

 KH Gene Models(Former Version)

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Genes (KH) [?]	Genes (KH, ver.2012) [?]	Genes abandoned in KH, ver.2012 [?]
Genes (KH, ver.2010) [?]	Genes abandoned in KH, ver.2010 [?]

 Whole Genome Shotgun Reads

 Whole Genome Shotgun Reads

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WGS Reads -JGI- [?]

WGS Reads -NIG- [?]

 CDNA evidence

 CDNA evidence

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5'-Full-Length EST [?]	EST [?]
cDNA Full Insert Sequences [?]	ESTs ( mapped with low score ) [?]

 Overview

 Overview

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JGI ver1 Scaffold [?]

 Region

 Region

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Gap

JGI ver1 Scaffold [?]

 Analysis

 Analysis

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Restriction Sites

Snapshots

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Snapshot Timestamp [GMT]

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